Recent publications

This page contains an archive of links to publications arising from within the Systems Biology theme over the last 18 months.

Translational recoding as a feedback controller
Bates, DG, Amirova, S, et al (Nucleic Acids Research, 7 February 2011)

Intervention, integration and translation in obesity research
O'Malley, M, Stotz, K (Philosophy, Ethics, and Humanities in Medicine, 28 January 2011)

Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis
Kent, NA, Paszkiewicz, K, et al (Nucleic Acids Research, 3 December 2010)

Queueing induced by bidirectional motor motion near the end of a microtubule
Ashwin, P, Steinberg, G, et al (Physical Review E, 4 November 2010)

Quantitative analysis of regulatory flexibility under changing environmental conditions.
Edwards, KD, Akman, O, et al (Mol Syst Biol, 2 November 2010)

Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt
Studholme, D, et al (FEMS Mirobiol Lett, 1 September 2010)

Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks
Soyer, O, et al (PLoS Computational Biology, 26 August 2010)

Daily Bisphenol A Excretion and Associations with Sex Hormone Concentrations
Galloway, T, et al (Environmental Health Perspectives, 25 August 2010)

Modeling Chemotaxis Reveals the Role of Reversed Phosphotransfer and a Bi-Functional Kinase-Phosphatase
Porter, S, et al (PLoS Computational Biology, 19 August 2010)

De novo assembly of short sequence reads
Studholme, DJ, et al (NCBI, 19 August 2010)

Response dynamics of phosphorelays suggest their potential utility in cell signalling
Soyer, O, et al (Royal Society Interface, 11 August 2010, doi:10.1098/​rsif.2010.0336)

Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping
Studholme, DJ, et al (NCBI, 1 June 2010)

A systems engineering approach to validation of a pulmonary physiology simulator for clinical applications
Bates, D, et al (Royal Society Interface, 10 June 2010, doi:10.1098/rsif.2010.0244

The promise of evolutionary systems biology: lessons from bacterial chemotaxis
Soyer, O (Science Signaling, 29 June 2010, doi:10.1126/scisignal.3128pe23)

Robustness from flexibility in the fungal circadian clock
Akman, OE, et al (BMC Sys Biol, 24 June 2010, doi:10.1186/1752-0509-4-88)

A systems engineering approach to validation of a pulmonary physiology simulator for clinical applications
Bates, D, et al (Royal Society Interface, 10 June 2010, doi:10.1098/rsif.2010.0244

Making Knowledge in Synthetic Biology: Design Meets Kludge
O'Malley, M.A. (Biological Theory, 17 May 2010, doi:10.1162/BIOT_a_00006)

The Structure of Sedoheptulose-7-Phosphate Isomerase from Burkholderia pseudomallei Reveals a Zinc Binding Site at the Heart of the Active Site
Harmer, N.J. (Science Direct, 4 May 2010,  doi:10.1016/j.jmb.2010.04.058)

Evidence for large complex networks of plant short silencing RNAs
Studholme D.J. et al. (PLoS ONE, 26 March 2010, doi: 10.1371/journal.pone.0009901)

A Boolean model of the Pseudomonas Syringae hrp regulon predicts a tightly regulated system
Studholme D, er al (PloS One, 15 February 2010, doi:10.1371/journal.pone.0009101)

Using structural information to change the phosphotransfer specificity of a two-component chemotaxis signalling complex
Porter SL, et al (PLoS Biol., 9 February 2010, doi: 8(2):e1000306.)

Analysis and extension of a biochemical network model using robust control theory
Bates DG, et al (InterScience, 20 September 2009, doi: 10.1002/rnc.1528)