Fundamentals in Human Genetics and Genomics
| Module title | Fundamentals in Human Genetics and Genomics |
|---|---|
| Module code | HPDM082A |
| Academic year | 2021/2 |
| Credits | 15 |
| Module staff | Professor Caroline Wright (Convenor) |
| Duration: Term | 1 | 2 | 3 |
|---|---|---|---|
| Duration: Weeks | 8 |
| Number students taking module (anticipated) | 40 |
|---|
Module description
This module is available either via blended learning with contact days on-campus, or as fully distance learning via our online platform. There may be some variation in scheduled teaching and learning activities depending on your mode of study.
The module begins by covering basic concepts in genetics and molecular biology:
- the relationship between DNA, RNA and protein
- functional elements in the human genome (enhancers, promoters, introns, exons, untranslated regions) and their role in gene regulation
- DNA replication, mitosis and meiosis
The module then introduces genetic variation:
- the different types of variants (SNVs, indels, CNVs, chromosomal aneuploidies)
- how variation arises
- the extent of variation in human populations.
The module ends with a review of some of the fundamental tools used in in genomics and genomic medicine:
- the reference genome
- basics of genetic technologies
- use of genome browsers
- modes of inheritance
- linkage and linkage disequilibrium
- epigenetics and imprinting
- pleiotropy and heterogeneity.
Module aims - intentions of the module
This foundation module aims to provide you with an introduction to the key areas of cell biology, genomics, human genetics and genetic variation. It will give you a fundamental understanding of how genomic medicine is/will/can be utilised to elucidate disease mechanisms and biology.
Intended Learning Outcomes (ILOs)
ILO: Module-specific skills
On successfully completing the module you will be able to...
- 1. Explain core elements of genome architecture, including the properties of DNA and chromatin structure
- 2. Critically evaluate the regulation of gene expression, transcription and translation
- 3. Interpret variation in genome structure and sequence in the context of physiological function and disease, and across human populations
ILO: Discipline-specific skills
On successfully completing the module you will be able to...
- 4. Describe the correlation between genotype and phenotype
- 5. Discuss the range of variation in the genome and its role in disease
- 6. Identify the range, purposes, benefits and potential risks of sharing, integrating and aggregating genomic data and clinical information.
- 7. Critically evaluate the use of genomic data in personalised medicine.
ILO: Personal and key skills
On successfully completing the module you will be able to...
- 8. Communicate accurately and effectively with peers, tutors and the public.
Syllabus plan
Whilst the module's precise content may vary from year to year, an example of an overall structure is as follows:
- Introduction to terminology
- How to read a scientific paper
- Introduction to history of DNA and genomic medicine
- Architecture of the human genome and genetic variation within it.
- Centre dogma, understanding the relationship between DNA, RNA and proteins
- Gene structure and regulation: enhancers, promoters, transcription factors, silencers.
- Mitosis and meiosis.
- DNA sequence variation, type and frequency, e.g. SNVs, indels, CNVs, rearrangements, STRs.
- How variation arises and its extent in populations (e.g. HapMap,1000G, ExAC/gnomAD).
- Introduction to linkage, linkage disequilibrium and Hardy-Weinberg equilibrium
- Mutational mechanisms: how DNA variants affect gene function or expression to cause disease
- Correlation of genotype with phenotype in rare and common diseases.
- Concepts of heterogeneity and pleiotropy.
- Modes of inheritance for clinical manifestation of human variation.
- Introduction to epigenetics and imprinting.
- Basic understanding of and familiarisation with genome browsers.
- Basic introduction to genetic technologies.
- Approaches to data analysis, sharing and aggregation in large-scale genomics projects
Learning activities and teaching methods (given in hours of study time)
| Scheduled Learning and Teaching Activities | Guided independent study | Placement / study abroad |
|---|---|---|
| 24 | 126 | 0 |
Details of learning activities and teaching methods
| Category | Hours of study time | Description |
|---|---|---|
| Learning and teaching activities | 24 | Lectures and workshops (on-campus or online) |
| Guided independent study | 5 | Tutor guided online discussion forum |
| Guided independent study | 15 | Online quizzes and feedback |
| Guided independent study | 20 | Writing essay |
| Guided independent study | 10 | Preparation and taking formative multiple choice exam (repeat attempts will be allowed) |
| Guided independent study | 76 | Independent guided literature research |
Formative assessment
| Form of assessment | Size of the assessment (eg length / duration) | ILOs assessed | Feedback method |
|---|---|---|---|
| Online quizzes | Weekly | 1-7 | Written |
| MCQ online exam | 1 hour, by the end of the module | 1-7 | Written |
Summative assessment (% of credit)
| Coursework | Written exams | Practical exams |
|---|---|---|
| 100 | 0 | 0 |
Details of summative assessment
| Form of assessment | % of credit | Size of the assessment (eg length / duration) | ILOs assessed | Feedback method |
|---|---|---|---|---|
| Contribution to online discussion forum | 10 | 5 substantive posts | 1-8 | Written |
| Essay | 90 | 2500 words | 1-8 | Written |
Details of re-assessment (where required by referral or deferral)
| Original form of assessment | Form of re-assessment | ILOs re-assessed | Timescale for re-assessment |
|---|---|---|---|
| Contribution to online discussion forum (10%) , (5 substantive posts) | Contribution to online discussion forum | 1-8 | Typically within six weeks of the result |
| Essay (90%), (2500 words) | Essay | 1-8 | Typically within six weeks of the result |
Re-assessment notes
Please refer to the TQA section on Referral/Deferral: http://as.exeter.ac.uk/academic-policy-standards/tqa-manual/aph/consequenceoffailure/
Indicative learning resources - Basic reading
Textbooks:
- Strachan, T., Goodship, J. and Chinnery, P. (2015). Genetics and Genomics in Medicine. New York: Garland Science. (electronic access through University of Exeter library)
- Read, A. and Donnai, D. (2015). New Clinical Genetics 3. Bloxham, Oxfordshire: Scion.
- Turnpenny, P. and Ellard, S. (2012). Emery's Elements of Medical Genetics. Philadelphia: Elsevier/Churchill Livingstone. (electronic access through University of Exeter library)
- Strachan, T., Read, A. and Strachan, T. (2011). Human Molecular Genetics 4 . New York: Garland Science.
Relevant papers will be included within each section of the module
Indicative learning resources - Web based and electronic resources
ELE – https://vle.exeter.ac.uk/course/view.php?id=9120
Web based and electronic resources:
Henry Stewart Talks – Introduction to Human Genetics:
https://hstalks.com/playlist/281/introduction-to-human-genetics/?biosci
| Credit value | 15 |
|---|---|
| Module ECTS | 7.5 |
| NQF level (module) | 7 |
| Available as distance learning? | Yes |
| Origin date | 01/12/2015 |
| Last revision date | 13/05/2021 |
